ibm/otter_primekg_classifier
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Cannot get the config names for the dataset.
Error code: ConfigNamesError
Exception: FileNotFoundError
Message: Couldn't find a dataset script at /src/services/worker/ibm/otter_primekg/otter_primekg.py or any data file in the same directory. Couldn't find 'ibm/otter_primekg' on the Hugging Face Hub either: FileNotFoundError: No (supported) data files or dataset script found in ibm/otter_primekg.
Traceback: Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/dataset/config_names.py", line 55, in compute_config_names_response
for config in sorted(get_dataset_config_names(path=dataset, token=hf_token))
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/inspect.py", line 351, in get_dataset_config_names
dataset_module = dataset_module_factory(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 1508, in dataset_module_factory
raise FileNotFoundError(
FileNotFoundError: Couldn't find a dataset script at /src/services/worker/ibm/otter_primekg/otter_primekg.py or any data file in the same directory. Couldn't find 'ibm/otter_primekg' on the Hugging Face Hub either: FileNotFoundError: No (supported) data files or dataset script found in ibm/otter_primekg.Need help to make the dataset viewer work? Open a discussion for direct support.
Otter PrimeKG Dataset Card
The Otter PrimeKG dataset contains 12,757,257 triples with Proteins, Drugs and Diseases. It contains protein sequences, SMILES and text
Dataset details
PrimeKG
PrimeKG (the Precision Medicine Knowledge Graph) integrates 20 biomedical resources, it describes 17,080 diseases with 4 million relationships. PrimeKG includes nodes describing Gene/Proteins (29,786) and Drugs (7,957 nodes). The Multimodal Knowledge Graph (MKG) that we built from PrimeKG contains 13 modalities, 12,757,300 edges (154,130 data properties, and 12,603,170 object properties), including 642,150 edges describing interactions between proteins, 25,653 edges describing drug-protein interactions, and 2,672,628 describing interactions between drugs.
Original dataset:
- GitHub Repo
- Citation: Chandak, P., Huang, K. & Zitnik, M. Building a knowledge graph to enable precision medicine. Sci Data 10, 67 (2023). https://doi.org/10.1038/s41597-023-01960-3
Paper or resources for more information:
License:
MIT
Where to send questions or comments about the dataset:
Models trained on Otter PrimeKG
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