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Amelie Schreiber

AmelieSchreiber

https://mastodon.social/@OctoNoodle

amelie_iska

Amelie-Schreiber

AI & ML interests

Diffusion and flow matching models for proteins, small molecules, DNA, and RNA, protein language models, machine translation, equivariant attention mechanisms, LoRA, and QLoRA.

Articles

RFDiffusion Potentials

1 day ago

• 8

A Guide to Designing New Functional Proteins and Improving Protein Function, Stability, and Diversity with Generative AI

2 days ago

• 14

Predicting the Effects of Mutations on Protein Function with ESM-2

Dec 13, 2023

• 2

Faster Persistent Homology Alignment and Protein Complex Clustering with ESM-2 and Persistence Landscapes

Nov 30, 2023

Clustering Protein Complexes using Persistent Homology and Finetuning ESM-2 for PPI Network Prediction

Nov 29, 2023

ESM-2 for Generating and Optimizing Peptide Binders for Target Proteins

Nov 23, 2023

Persistent Homology Alignment (PHA): Replacing Multiple Sequence Alignments using ESM-2 and Persistent Homology

Nov 15, 2023

Predicting Protein-Protein Interactions Using a Protein Language Model and Linear Sum Assignment

Oct 15, 2023

• 4

ESMBind (ESMB) Ensemble Models

Sep 22, 2023

• 4

ESMBind (ESMB): Low Rank Adaptation of ESM-2 for Protein Binding Site Prediction

Sep 15, 2023

• 5

Organizations

AmelieSchreiber's activity

liked a dataset about 2 months ago

ProtLLM/ProtLLM

Updated Mar 12 • 5

liked 2 models 2 months ago

kuleshov-group/caduceus-ps_seqlen-131k_d_model-256_n_layer-16

Fill-Mask • Updated Mar 14 • 2.14k • 10

kuleshov-group/caduceus-ph_seqlen-131k_d_model-256_n_layer-16

Fill-Mask • Updated Mar 14 • 1.06k • 4

liked a space 3 months ago

Running on T4

📊

DiffDock Web

liked 2 datasets 3 months ago

chao1224/ProteinDT

Viewer • Updated Feb 20 • 1

chao1224/MoleculeSTM

Viewer • Updated Dec 19, 2023 • 8

liked 2 models 3 months ago

chao1224/MoleculeSTM

Updated Feb 20 • 6

chao1224/ProteinDT

Updated Feb 20 • 2

liked a space 7 months ago

Running

🌖

ESM-Variants

liked a model 10 months ago

facebook/esm2_t6_8M_UR50D

Fill-Mask • Updated Mar 21, 2023 • 1.51M • 14